Index _ | A | B | C | D | F | G | I | K | L | M | N | O | P | R | S | T | U | W _ __getitem__() (pykinbiont.GrowthData method) (pykinbiont.GrowthFitResults method) (pykinbiont.IrregularGrowthData method) __iter__() (pykinbiont.GrowthFitResults method) __len__() (pykinbiont.GrowthFitResults method) A AbstractGrowthModel (class in pykinbiont) aic_correction (pykinbiont.FitOptions attribute) all_results (pykinbiont.CurveFitResult attribute) average_replicates (pykinbiont.FitOptions attribute) B best_aic (pykinbiont.CurveFitResult attribute) best_model (pykinbiont.CurveFitResult attribute) best_params (pykinbiont.CurveFitResult attribute) blank_from_labels (pykinbiont.FitOptions attribute) blank_subtraction (pykinbiont.FitOptions attribute) blank_value (pykinbiont.FitOptions attribute) boxcar_window (pykinbiont.FitOptions attribute) C calibration_file (pykinbiont.FitOptions attribute) centroids (pykinbiont.GrowthData attribute) (pykinbiont.IrregularGrowthData attribute) cluster (pykinbiont.FitOptions attribute) cluster_exp_prototype (pykinbiont.FitOptions attribute) cluster_prescreen_constant (pykinbiont.FitOptions attribute) cluster_q_high (pykinbiont.FitOptions attribute) cluster_q_low (pykinbiont.FitOptions attribute) cluster_tol_const (pykinbiont.FitOptions attribute) cluster_trend_test (pykinbiont.FitOptions attribute) clusters (pykinbiont.GrowthData attribute) (pykinbiont.IrregularGrowthData attribute) configure() (in module pykinbiont) correct_negatives (pykinbiont.FitOptions attribute) CurveFitResult (class in pykinbiont) curves (pykinbiont.GrowthData attribute) (pykinbiont.IrregularGrowthData attribute) cut_stationary_phase (pykinbiont.FitOptions attribute) D data (pykinbiont.GrowthFitResults attribute) DDDEModel (class in pykinbiont) F fit() (in module pykinbiont) FitOptions (class in pykinbiont) fitted_curve (pykinbiont.CurveFitResult attribute) from_csv() (pykinbiont.GrowthData static method) from_dataframe() (pykinbiont.GrowthData static method) func (pykinbiont.NLModel attribute) (pykinbiont.ODEModel attribute) G gaussian_h_mult (pykinbiont.FitOptions attribute) gaussian_time_grid (pykinbiont.FitOptions attribute) get_jl() (in module pykinbiont) GrowthData (class in pykinbiont) GrowthFitResults (class in pykinbiont) I init() (in module pykinbiont) IrregularGrowthData (class in pykinbiont) K kmeans_max_iters (pykinbiont.FitOptions attribute) kmeans_n_init (pykinbiont.FitOptions attribute) kmeans_seed (pykinbiont.FitOptions attribute) kmeans_tol (pykinbiont.FitOptions attribute) L label (pykinbiont.CurveFitResult attribute) labels (pykinbiont.GrowthData attribute) (pykinbiont.IrregularGrowthData attribute) lambda_max (pykinbiont.DDDEModel attribute) lambda_min (pykinbiont.DDDEModel attribute) lambda_step (pykinbiont.DDDEModel attribute) LogLinModel (class in pykinbiont) loss (pykinbiont.CurveFitResult attribute) (pykinbiont.FitOptions attribute) lower (pykinbiont.ModelSpec attribute) lowess_frac (pykinbiont.FitOptions attribute) M max_degree (pykinbiont.DDDEModel attribute) MODEL_REGISTRY (in module pykinbiont) models (pykinbiont.ModelSpec attribute) ModelSpec (class in pykinbiont) multistart (pykinbiont.FitOptions attribute) N n_clusters (pykinbiont.FitOptions attribute) n_eq (pykinbiont.ODEModel attribute) n_restart (pykinbiont.FitOptions attribute) name (pykinbiont.NLModel attribute) (pykinbiont.ODEModel attribute) negative_method (pykinbiont.FitOptions attribute) negative_threshold (pykinbiont.FitOptions attribute) NLModel (class in pykinbiont) O ODEModel (class in pykinbiont) opt_params (pykinbiont.FitOptions attribute) P param_names (pykinbiont.CurveFitResult attribute) (pykinbiont.NLModel attribute) (pykinbiont.ODEModel attribute) params (pykinbiont.ModelSpec attribute) preprocess() (in module pykinbiont) pt_smooth_derivative (pykinbiont.FitOptions attribute) R raw_curves (pykinbiont.IrregularGrowthData attribute) raw_times (pykinbiont.IrregularGrowthData attribute) results (pykinbiont.GrowthFitResults attribute) S save_results() (in module pykinbiont) scattering_correction (pykinbiont.FitOptions attribute) scattering_method (pykinbiont.FitOptions attribute) smooth (pykinbiont.FitOptions attribute) smooth_method (pykinbiont.FitOptions attribute) smooth_pt_avg (pykinbiont.FitOptions attribute) stationary_percentile_thr (pykinbiont.FitOptions attribute) stationary_pt_smooth_derivative (pykinbiont.FitOptions attribute) stationary_thr_od (pykinbiont.FitOptions attribute) stationary_win_size (pykinbiont.FitOptions attribute) step (pykinbiont.IrregularGrowthData attribute) T times (pykinbiont.CurveFitResult attribute) (pykinbiont.GrowthData attribute) (pykinbiont.IrregularGrowthData attribute) to_dataframe() (pykinbiont.GrowthFitResults method) U upper (pykinbiont.ModelSpec attribute) W wcss (pykinbiont.GrowthData attribute) (pykinbiont.IrregularGrowthData attribute)
